RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00739 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00739 Molecule name [?]: PHE-TRNA, ELONGATION FACTOR EF-TU:GDPNP TERNARY COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 1TTT Reference [?]: P.NISSEN,M.KJELDGAARD,S.THIRUP,G.POLEKHINA, L.RESHETNIKOVA,B.F.CLARK,J.NYBORG. CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF PHE-TRNAPHE, EF-TU, AND A GTP ANALOG.. SCIENCE V. 270 1464 1995 ASTM SCIEAS US ISSN 0036-8075 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: THERMUS AQUATICUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.70 ANGSTROMS; ran through RNAview Number of molecules [?]: 3 Length [?]: 228 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 94 Number of paired bases [?]: 134

Click on any header below for additional features.

Stem features Number of stems [?]: 12 Number of base pairs in stems [?]: 67 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.58 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -4.5 Average estimated free energy [?]: -8.94 Minimum estimated free energy [?]: -10.6

Hairpin loop features Number of hairpin loops [?]: 9 Maximum number of free bases in hairpin loops [?]: 8 Average number of free bases in hairpin loops [?]: 6.89 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 3 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 1.67 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.33 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 4 Average multi-loop relative asymmetry: 0.64 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 5 Total number of AC non-canonical base pairs: 2 Total number of AG non-canonical base pairs: 3

Pseudoknot features