RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00617 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00617 Molecule name [?]: SOLUTION STRUCTURE OF THE BACTERIOPHAGE PHI21 N PEPTIDE- BOXB RNA COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 1NYB Reference [?]: C.D.CILLEY,J.R.WILLIAMSON. STRUCTURAL MIMICRY IN THE PHAGE PHI21 N PEPTIDE-BOXB RNA COMPLEX. RNA V. 9 663 2003 ASTM RNARFU UK ISSN 1355-8382 Type [?]: Viral & Phage RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: BACTERIOPHAGE PHI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 24 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 20

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 10 Maximum length of a stem [?]: 10 Average length of a stem [?]: 10 Minimum length of a stem [?]: 10 Maximum estimated free energy [?]: -18.5 Average estimated free energy [?]: -18.5 Minimum estimated free energy [?]: -18.5

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of CC non-canonical base pairs: 1

Pseudoknot features