RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00434
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00434
Molecule name [?]:	BACTERIOPHAGE HK022 NUN-PROTEIN-NUTBOXB-RNA COMPLEX
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1HJI
Reference [?]:	C.FABER,M.SCHARPF,T.BECKER,H.STICHT,P.ROSCH. THE STRUCTURE OF THE COLIPHAGE HK022 NUN PROTEIN-LAMBDA-PHAGE BOXB RNA COMPLEX. IMPLICATIONS FOR THE MECHANISM OF TRANSCRIPTION TERMINATION.. J.BIOL.CHEM. V. 276 32064 2001 ASTM JBCHA3 US ISSN 0021-9258
Type [?]:	Viral & Phage RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	BACTERIOPHAGE HK022
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	15
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00668
Number of domains [?]:	1
Number of unpaired bases [?]:	3
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-12.1
Average estimated free energy [?]:	-12.1
Minimum estimated free energy [?]:	-12.1

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	3
Average number of free bases in hairpin loops [?]:	3
Minimum number of free bases in hairpin loop [?]:	3

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features