RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00430 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00430 Molecule name [?]: TYROSYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH WILD-TYPE TRNATYR(GUA) AND WITH ATP Source [?]: RCSB Protein Data Bank Source ID [?]: 1H3E Reference [?]: A.YAREMCHUK,I.KRIKLIVYI,M.TUKALO,S.CUSACK. CLASS I TYROSYL-TRNA SYNTHETASE HAS A CLASS II MODE OF COGNATE TRNA RECOGNITION.. EMBO J. V. 21 3829 2002 ASTM EMJODG UK ISSN 0261-4189 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: THERMUS THERMOPHILUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.90 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 81 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 31 Number of paired bases [?]: 50

Click on any header below for additional features.

Stem features Number of stems [?]: 5 Number of base pairs in stems [?]: 25 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -6.6 Average estimated free energy [?]: -10.62 Minimum estimated free energy [?]: -17.5

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 10 Average number of free bases in hairpin loops [?]: 6.25 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 3 Average number of free bases in multi-loops: 1 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 3 Average multi-loop absolute asymmetry: 1.6 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 1.5 Average multi-loop relative asymmetry: 0.27 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 5 Average number of branches in multi-loops: 5 Minimum number of branches in multi-loops: 5

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AC non-canonical base pairs: 1

Pseudoknot features