RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00373 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00373 Molecule name [?]: CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE Source [?]: RCSB Protein Data Bank Source ID [?]: 1EUQ Reference [?]: L.D.SHERLIN,T.L.BULLOCK,K.J.NEWBERRY,R.S.LIPMAN, Y.M.HOU,B.BEIJER,B.S.SPROAT,J.J.PERONA. INFLUENCE OF TRANSFER RNA TERTIARY STRUCTURE ON AMINOACYLATION EFFICIENCY BY GLUTAMINYL AND CYSTEINYL-TRNA SYNTHETASES.. J.MOL.BIOL. V. 299 431 2000 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.10 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 72 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 26 Number of paired bases [?]: 46

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 23 Maximum length of a stem [?]: 8 Average length of a stem [?]: 5.75 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -6.7 Average estimated free energy [?]: -10.42 Minimum estimated free energy [?]: -13.4

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 5.67 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 2 Average number of free bases in multi-loops: 1 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 2 Average multi-loop absolute asymmetry: 1.33 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 1 Average multi-loop relative asymmetry: 0.33 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AA non-canonical base pairs: 1 Total number of AC non-canonical base pairs: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features