RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule CRW_00732 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: CRW_00732 Molecule name [?]: a.I2.c.N.tabacum.A.trnK.i1 Source [?]: Gutell Lab CRW Site Source ID [?]: a.I2.c.N.tabacum.A.trnK.i1 Reference [?]: http://www.rna.ccbb.utexas.edu; Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., Pande N., Shang Z., Yu N., and Gutell R.R. (2002). The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron, and other RNAs. BioMed Central Bioinformatics, 3:2. [Correction: BioMed Central Bioinformatics. 3:15.] Type [?]: Group II Intron [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 2609 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 6 Number of unpaired bases [?]: 2375 Number of paired bases [?]: 234

Click on any header below for additional features.

Stem features Number of stems [?]: 24 Number of base pairs in stems [?]: 117 Maximum length of a stem [?]: 12 Average length of a stem [?]: 4.88 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.1 Average estimated free energy [?]: -7.06 Minimum estimated free energy [?]: -18.9

Hairpin loop features Number of hairpin loops [?]: 12 Maximum number of free bases in hairpin loops [?]: 1743 Average number of free bases in hairpin loops [?]: 169.25 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 3 Maximum number of free bases in bulge loops [?]: 88 Average number of free bases in bulge loops [?]: 15.17 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 6 Maximum number of free bases in internal loops: 11 Average number of free bases in internal loops: 4.33 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 8 Average internal loop absolute asymmetry: 3 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 4 Average internal loop relative asymmetry: 1.83 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 3 Maximum number of free bases in multi-loops: 39 Average number of free bases in multi-loops: 8.17 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 38 Average multi-loop absolute asymmetry: 11 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 39 Average multi-loop relative asymmetry: 3.44 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 5 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AA non-canonical base pairs: 1 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features