RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule CRW_00532 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: CRW_00532 Molecule name [?]: d.233.m.A.turrita Source [?]: Gutell Lab CRW Site Source ID [?]: d.233.m.A.turrita Reference [?]: http://www.rna.ccbb.utexas.edu; Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., Pande N., Shang Z., Yu N., and Gutell R.R. (2002). The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron, and other RNAs. BioMed Central Bioinformatics, 3:2. [Correction: BioMed Central Bioinformatics. 3:15.] Type [?]: 23S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 1077 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 9 Number of unpaired bases [?]: 547 Number of paired bases [?]: 530

Click on any header below for additional features.

Stem features Number of stems [?]: 69 Number of base pairs in stems [?]: 265 Maximum length of a stem [?]: 13 Average length of a stem [?]: 3.84 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -3.69 Minimum estimated free energy [?]: -12.6

Hairpin loop features Number of hairpin loops [?]: 29 Maximum number of free bases in hairpin loops [?]: 15 Average number of free bases in hairpin loops [?]: 5.97 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 16 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.66 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 15 Maximum number of free bases in internal loops: 26 Average number of free bases in internal loops: 4.7 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 23 Average internal loop absolute asymmetry: 5.4 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 9 Average internal loop relative asymmetry: 3.07 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 9 Maximum number of free bases in multi-loops: 15 Average number of free bases in multi-loops: 4.18 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 15 Average multi-loop absolute asymmetry: 3.29 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 15 Average multi-loop relative asymmetry: 1.44 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 5 Average number of branches in multi-loops: 4.22 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 26 Total number of AA non-canonical base pairs: 7 Total number of AC non-canonical base pairs: 5 Total number of AG non-canonical base pairs: 6 Total number of CU non-canonical base pairs: 5 Total number of GG non-canonical base pairs: 1 Total number of UU non-canonical base pairs: 2

Pseudoknot features