RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00453 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00453 Molecule name [?]: RNase P RNA, Zygosaccharomyces florentinus, strain NRRL Y-1560 Source [?]: RNase P Database Source ID [?]: Zygosaccharomyces florentinus, strain NRRL Y-1560 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 262 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 158 Number of paired bases [?]: 104

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 52 Maximum length of a stem [?]: 10 Average length of a stem [?]: 6.5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -4.6 Average estimated free energy [?]: -9.8 Minimum estimated free energy [?]: -17.4

Hairpin loop features Number of hairpin loops [?]: 5 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 3.8 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 11 Average number of free bases in internal loops: 9 Minimum number of free bases in internal loop: 7 Maximum internal loop absolute asymmetry: 4 Average internal loop absolute asymmetry: 4 Minimum internal loop absolute asymmetry: 4 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 73 Average number of free bases in multi-loops: 21.75 Minimum number of free bases in multi-loop: 1 Maximum multi-loop absolute asymmetry: 72 Average multi-loop absolute asymmetry: 36.83 Minimum multi-loop absolute asymmetry: 3 Maximum multi-loop relative asymmetry: 73 Average multi-loop relative asymmetry: 9.63 Minimum multi-loop relative asymmetry: 0.01 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of UU non-canonical base pairs: 2

Pseudoknot features