RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00329 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00329 Molecule name [?]: RNase P RNA, Schizosaccharomyces japonicus Source [?]: RNase P Database Source ID [?]: Schizosaccharomyces japonicus Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 286 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: ASE_00333, ASE_00352 Number of domains [?]: 1 Number of unpaired bases [?]: 160 Number of paired bases [?]: 126

Click on any header below for additional features.

Stem features Number of stems [?]: 11 Number of base pairs in stems [?]: 63 Maximum length of a stem [?]: 13 Average length of a stem [?]: 5.73 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -0.9 Average estimated free energy [?]: -9.06 Minimum estimated free energy [?]: -21.1

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 8 Average number of free bases in hairpin loops [?]: 6 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 12 Average number of free bases in internal loops: 10 Minimum number of free bases in internal loop: 8 Maximum internal loop absolute asymmetry: 4 Average internal loop absolute asymmetry: 2 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 3 Maximum number of free bases in multi-loops: 22 Average number of free bases in multi-loops: 8.44 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 20 Average multi-loop absolute asymmetry: 11.11 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 11 Average multi-loop relative asymmetry: 2.8 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AA non-canonical base pairs: 1 Total number of CU non-canonical base pairs: 1

Pseudoknot features