RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00114 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00114 Molecule name [?]: RNase P RNA, Erysipelothrix rhusiopathiae Source [?]: RNase P Database Source ID [?]: Erysipelothrix rhusiopathiae Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 302 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 148 Number of paired bases [?]: 154

Click on any header below for additional features.

Stem features Number of stems [?]: 18 Number of base pairs in stems [?]: 77 Maximum length of a stem [?]: 8 Average length of a stem [?]: 4.28 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -5.11 Minimum estimated free energy [?]: -15.4

Hairpin loop features Number of hairpin loops [?]: 8 Maximum number of free bases in hairpin loops [?]: 16 Average number of free bases in hairpin loops [?]: 7.25 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 3 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.67 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 3 Maximum number of free bases in internal loops: 12 Average number of free bases in internal loops: 6.17 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 1.67 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 4 Maximum number of free bases in multi-loops: 26 Average number of free bases in multi-loops: 2.8 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 26 Average multi-loop absolute asymmetry: 4.25 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 8.67 Average multi-loop relative asymmetry: 0.67 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 5 Average number of branches in multi-loops: 3.75 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 13 Total number of AC non-canonical base pairs: 3 Total number of AG non-canonical base pairs: 5 Total number of CC non-canonical base pairs: 2 Total number of CU non-canonical base pairs: 2 Total number of GG non-canonical base pairs: 1

Pseudoknot features