RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00137 Colw.psyc._CP000083_1-350 tmRNA Unknown tmRNA Database Colw.psyc._CP000083_1-350 350 TMR_00138 Coma.test._TRW-285_1-378 tmRNA Unknown tmRNA Database Coma.test._TRW-285_1-378 378 TMR_00139 Copr.prot._TRW-351627_1-353 tmRNA Unknown tmRNA Database Copr.prot._TRW-351627_1-353 353 TMR_00140 Cory.diph._BX248356_1-385 tmRNA Unknown tmRNA Database Cory.diph._BX248356_1-385 385 TMR_00141 Cory.effi._BA000035_1-376 tmRNA Unknown tmRNA Database Cory.effi._BA000035_1-376 376 TMR_00142 Cory.glut._BX927150_1-377 tmRNA Unknown tmRNA Database Cory.glut._BX927150_1-377 377 TMR_00143 Coxi.burn._AE016828_1-360 tmRNA Unknown tmRNA Database Coxi.burn._AE016828_1-360 360 TMR_00144 Croc.wats._TRW-165597_1-386 tmRNA Unknown tmRNA Database Croc.wats._TRW-165597_1-386 386 TMR_00145 Cupr.neca._TRW-106590_1-359 tmRNA Unknown tmRNA Database Cupr.neca._TRW-106590_1-359 359 TMR_00146 Cyan.cald._AF022186_1-254 tmRNA Unknown tmRNA Database Cyan.cald._AF022186_1-254 254

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)