RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00234 OCE.IHE. SRP RNA Unknown SRP Database OCE.IHE. 270 SRP_00235 ODO.SIN.CL. SRP RNA Unknown SRP Database ODO.SIN.CL. 101 SRP_00236 ONC.VOL. SRP RNA Unknown SRP Database ONC.VOL. 293 SRP_00237 ORI.CUN. SRP RNA Unknown SRP Database ORI.CUN. 299 SRP_00238 ORN.ANA. SRP RNA Unknown SRP Database ORN.ANA. 302 SRP_00239 ORY.SA-A SRP RNA Unknown SRP Database ORY.SA-A 318 SRP_00240 ORY.SA-B SRP RNA Oryza sativa SRP Database ORY.SA-B 311 SRP_00241 OXY.TRI. SRP RNA Unknown SRP Database OXY.TRI. 304 SRP_00242 PAN.TRO. SRP RNA Unknown SRP Database PAN.TRO. 299 SRP_00243 PAR.SPE. SRP RNA Unknown SRP Database PAR.SPE. 102

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)