RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00044 BOR.BRO. SRP RNA Unknown SRP Database BOR.BRO. 111 SRP_00045 BOR.BUR. SRP RNA Unknown SRP Database BOR.BUR. 155 SRP_00046 BOR.GAR. SRP RNA Unknown SRP Database BOR.GAR. 98 SRP_00047 BOR.PAR. SRP RNA Unknown SRP Database BOR.PAR. 111 SRP_00048 BOR.PER. SRP RNA Unknown SRP Database BOR.PER. 111 SRP_00049 BOS.TAU. SRP RNA Bos taurus SRP Database BOS.TAU. 301 SRP_00050 BRA.FLO. SRP RNA Unknown SRP Database BRA.FLO. 300 SRP_00051 BRA.JAP. SRP RNA Unknown SRP Database BRA.JAP. 105 SRP_00052 BRE.BRE. SRP RNA Unknown SRP Database BRE.BRE. 273 SRP_00053 BRU.MAL. SRP RNA Unknown SRP Database BRU.MAL. 301

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)