RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00014 ARA.TH-F SRP RNA Unknown SRP Database ARA.TH-F 304 SRP_00015 ARA.TH-G SRP RNA Unknown SRP Database ARA.TH-G 305 SRP_00016 ARC.FUL. SRP RNA Archaeoglobus fulgidus SRP Database ARC.FUL. 310 SRP_00017 ARM.SUB. SRP RNA Unknown SRP Database ARM.SUB. 301 SRP_00018 ASP.FUM. SRP RNA Unknown SRP Database ASP.FUM. 278 SRP_00019 ASP.NID. SRP RNA Unknown SRP Database ASP.NID. 269 SRP_00020 AZO.SPE. SRP RNA Unknown SRP Database AZO.SPE. 106 SRP_00021 BAC.ALC. SRP RNA Unknown SRP Database BAC.ALC. 268 SRP_00022 BAC.AMY. SRP RNA Unknown SRP Database BAC.AMY. 271 SRP_00023 BAC.ANT. SRP RNA Unknown SRP Database BAC.ANT. 205

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)