RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00004 AGR.TUM. SRP RNA Unknown SRP Database AGR.TUM. 103 SRP_00005 ANA.MAR. SRP RNA Unknown SRP Database ANA.MAR. 90 SRP_00006 ANO.GAM. SRP RNA Unknown SRP Database ANO.GAM. 303 SRP_00007 ANT.LOC. SRP RNA Unknown SRP Database ANT.LOC. 155 SRP_00008 AQU.AEO. SRP RNA Aquifex aeolicus SRP Database AQU.AEO. 77 SRP_00009 ARA.TH-A SRP RNA Unknown SRP Database ARA.TH-A 306 SRP_00010 ARA.TH-B SRP RNA Unknown SRP Database ARA.TH-B 304 SRP_00011 ARA.TH-C SRP RNA Unknown SRP Database ARA.TH-C 305 SRP_00012 ARA.TH-D SRP RNA Unknown SRP Database ARA.TH-D 305 SRP_00013 ARA.TH-E SRP RNA Unknown SRP Database ARA.TH-E 305

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)