RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00867 Sprinzl tRNA RM1020 tRNA Unknown Sprinzl tRNA Database RM1020 77 SPR_00868 Sprinzl tRNA RM1021 tRNA Unknown Sprinzl tRNA Database RM1021 77 SPR_00876 Sprinzl tRNA RM3800 tRNA Unknown Sprinzl tRNA Database RM3800 68 SPR_00882 Sprinzl tRNA RM7730 tRNA Unknown Sprinzl tRNA Database RM7730 73 SPR_00912 Sprinzl tRNA RP1020 tRNA Unknown Sprinzl tRNA Database RP1020 78 SPR_00913 Sprinzl tRNA RP1021 tRNA Unknown Sprinzl tRNA Database RP1021 78 SPR_00917 Sprinzl tRNA RP1661 tRNA Unknown Sprinzl tRNA Database RP1661 77 SPR_00932 Sprinzl tRNA RQ1010 tRNA Unknown Sprinzl tRNA Database RQ1010 76 SPR_00938 Sprinzl tRNA RQ4640 tRNA Unknown Sprinzl tRNA Database RQ4640 58 SPR_00943 Sprinzl tRNA RQ7550 tRNA Unknown Sprinzl tRNA Database RQ7550 72

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)