RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00438 Sprinzl tRNA RT3280 tRNA SPINACIA OLERACEA Sprinzl tRNA Database RT3280 75 SPR_00439 Sprinzl tRNA RT3920 tRNA Unknown Sprinzl tRNA Database RT3920 74 SPR_00440 Sprinzl tRNA RT4000 tRNA Unknown Sprinzl tRNA Database RT4000 74 SPR_00441 Sprinzl tRNA RT5360 tRNA Unknown Sprinzl tRNA Database RT5360 72 SPR_00442 Sprinzl tRNA RT7630 tRNA Unknown Sprinzl tRNA Database RT7630 76 SPR_00443 Sprinzl tRNA RT7631 tRNA Unknown Sprinzl tRNA Database RT7631 76 SPR_00444 Sprinzl tRNA RT9280 tRNA Unknown Sprinzl tRNA Database RT9280 76 SPR_00445 Sprinzl tRNA RV0380 tRNA Unknown Sprinzl tRNA Database RV0380 78 SPR_00446 Sprinzl tRNA RV0381 tRNA Unknown Sprinzl tRNA Database RV0381 78 SPR_00447 Sprinzl tRNA RV0382 tRNA Unknown Sprinzl tRNA Database RV0382 78

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)