RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00268 Sprinzl tRNA RL9990 tRNA Unknown Sprinzl tRNA Database RL9990 86 SPR_00269 Sprinzl tRNA RM0100 tRNA Unknown Sprinzl tRNA Database RM0100 76 SPR_00270 Sprinzl tRNA RM0500 tRNA Unknown Sprinzl tRNA Database RM0500 77 SPR_00271 Sprinzl tRNA RM0900 tRNA Unknown Sprinzl tRNA Database RM0900 76 SPR_00272 Sprinzl tRNA RM1140 tRNA Unknown Sprinzl tRNA Database RM1140 77 SPR_00273 Sprinzl tRNA RM1540 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RM1540 76 SPR_00274 Sprinzl tRNA RM1580 tRNA Unknown Sprinzl tRNA Database RM1580 77 SPR_00275 Sprinzl tRNA RM1660 tRNA Unknown Sprinzl tRNA Database RM1660 77 SPR_00276 Sprinzl tRNA RM2530 tRNA Unknown Sprinzl tRNA Database RM2530 77 SPR_00277 Sprinzl tRNA RM2560 tRNA Unknown Sprinzl tRNA Database RM2560 77

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)