RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00187 Sprinzl tRNA RK4812 tRNA Unknown Sprinzl tRNA Database RK4812 76 SPR_00188 Sprinzl tRNA RK5280 tRNA Unknown Sprinzl tRNA Database RK5280 67 SPR_00189 Sprinzl tRNA RK5360 tRNA Unknown Sprinzl tRNA Database RK5360 70 SPR_00190 Sprinzl tRNA RK6230 tRNA Unknown Sprinzl tRNA Database RK6230 68 SPR_00191 Sprinzl tRNA RK7630 tRNA Unknown Sprinzl tRNA Database RK7630 76 SPR_00192 Sprinzl tRNA RK7631 tRNA Unknown Sprinzl tRNA Database RK7631 76 SPR_00193 Sprinzl tRNA RK8530 tRNA Unknown Sprinzl tRNA Database RK8530 76 SPR_00194 Sprinzl tRNA RK9160 tRNA Unknown Sprinzl tRNA Database RK9160 76 SPR_00195 Sprinzl tRNA RK9161 tRNA Unknown Sprinzl tRNA Database RK9161 76 SPR_00196 Sprinzl tRNA RK9162 tRNA Unknown Sprinzl tRNA Database RK9162 76

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)