RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00807 RNAIII, RF00503, BX571857.1/2086973-2086458 RNAIII Unknown Rfam Database RF00503 BX571857.1/2086458-2086973 516 RFA_00808 RydC RNA, RF00505, AE016760.1/176652-176589 Other RNA Unknown Rfam Database RF00505 AE016760.1/176589-176652 64 RFA_00809 RydC RNA, RF00505, AL627270.1/77020-76955 Other RNA Unknown Rfam Database RF00505 AL627270.1/76955-77020 66 RFA_00810 R2 RNA element, RF00524, U13031.1/1423-1644 Other RNA Unknown Rfam Database RF00524 U13031.1/1644-1423 222 RFA_00811 R2 RNA element, RF00524, U13032.1/1423-1651 Other RNA Unknown Rfam Database RF00524 U13032.1/1651-1423 229 RFA_00812 R2 RNA element, RF00524, U13033.1/1423-1658 Other RNA Unknown Rfam Database RF00524 U13033.1/1658-1423 236 RFA_00813 R2 RNA element, RF00524, U13034.1/1423-1648 Other RNA Unknown Rfam Database RF00524 U13034.1/1648-1423 226 RFA_00814 R2 RNA element, RF00524, U13035.1/1423-1647 Other RNA Unknown Rfam Database RF00524 U13035.1/1647-1423 225 RFA_00815 R2 RNA element, RF00524, U81811.1/530-751 Other RNA Unknown Rfam Database RF00524 U81811.1/751-530 222 RFA_00816 R2 RNA element, RF00524, U81814.1/504-719 Other RNA Unknown Rfam Database RF00524 U81814.1/719-504 216

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)