RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00677 Hammerhead ribozyme (type I), RF00163, AF036748.1/120-164 Ham. Ribozyme Unknown Rfam Database RF00163 AF036748.1/164-120 45 RFA_00678 Hammerhead ribozyme (type I), RF00163, AF036751.1/118-161 Ham. Ribozyme Unknown Rfam Database RF00163 AF036751.1/161-118 44 RFA_00679 Hammerhead ribozyme (type I), RF00163, AF036752.1/118-162 Ham. Ribozyme Unknown Rfam Database RF00163 AF036752.1/162-118 45 RFA_00680 Hammerhead ribozyme (type I), RF00163, AF036754.1/91-138 Ham. Ribozyme Unknown Rfam Database RF00163 AF036754.1/138-91 48 RFA_00681 Hammerhead ribozyme (type I), RF00163, AF036755.1/118-162 Ham. Ribozyme Unknown Rfam Database RF00163 AF036755.1/162-118 45 RFA_00682 Hammerhead ribozyme (type I), RF00163, AF036756.1/118-162 Ham. Ribozyme Unknown Rfam Database RF00163 AF036756.1/162-118 45 RFA_00683 Hammerhead ribozyme (type I), RF00163, AF109181.1/634-589 Ham. Ribozyme Unknown Rfam Database RF00163 AF109181.1/589-634 46 RFA_00684 Hammerhead ribozyme (type I), RF00163, AF213692.1/353-397 Ham. Ribozyme Unknown Rfam Database RF00163 AF213692.1/397-353 45 RFA_00685 Hammerhead ribozyme (type I), RF00163, AF213693.1/184-228 Ham. Ribozyme Unknown Rfam Database RF00163 AF213693.1/228-184 45 RFA_00686 Hammerhead ribozyme (type I), RF00163, AF229821.1/180-64 Ham. Ribozyme Unknown Rfam Database RF00163 AF229821.1/64-180 117

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)