RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00617 Ciliate telomerase RNA, RF00025, U45434.1/113-327 Cili. Telo. RNA Unknown Rfam Database RF00025 U45434.1/327-113 215 RFA_00618 Ciliate telomerase RNA, RF00025, U45435.1/69-283 Cili. Telo. RNA Unknown Rfam Database RF00025 U45435.1/283-69 215 RFA_00619 Ciliate telomerase RNA, RF00025, U45436.1/201-414 Cili. Telo. RNA Unknown Rfam Database RF00025 U45436.1/414-201 214 RFA_00620 Ciliate telomerase RNA, RF00025, U45437.1/191-400 Cili. Telo. RNA Unknown Rfam Database RF00025 U45437.1/400-191 210 RFA_00621 RNase MRP, RF00030, AY090598.1/1-305 RNase MRP RNA Unknown Rfam Database RF00030 AY090598.1/305-1 305 RFA_00622 RNase MRP, RF00030, AY090601.1/1-284 RNase MRP RNA Unknown Rfam Database RF00030 AY090601.1/284-1 284 RFA_00623 RNase MRP, RF00030, AY090604.1/1-297 RNase MRP RNA Unknown Rfam Database RF00030 AY090604.1/297-1 297 RFA_00624 RNase MRP, RF00030, D30745.1/2851-3096 RNase MRP RNA Unknown Rfam Database RF00030 D30745.1/3096-2851 246 RFA_00625 RNase MRP, RF00030, Z11844.1/506-751 RNase MRP RNA Unknown Rfam Database RF00030 Z11844.1/751-506 246 RFA_00626 RNase E 5 prime UTR element, RF00040, AE016759.1/85553-85217 RNase E 5 UTR Unknown Rfam Database RF00040 AE016759.1/85217-85553 337

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)