RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00416 Hammerhead ribozyme (type III), RF00008, AJ241841.1/57-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241841.1/3-57 55 RFA_00417 Hammerhead ribozyme (type III), RF00008, AJ241843.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241843.1/3-56 54 RFA_00418 Hammerhead ribozyme (type III), RF00008, AJ241845.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241845.1/335-282 54 RFA_00419 Hammerhead ribozyme (type III), RF00008, AJ241847.1/281-334 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241847.1/334-281 54 RFA_00420 Hammerhead ribozyme (type III), RF00008, AJ247113.1/134-53 Ham. Ribozyme Unknown Rfam Database RF00008 AJ247113.1/53-134 82 RFA_00421 Hammerhead ribozyme (type III), RF00008, AJ247116.1/133-53 Ham. Ribozyme Unknown Rfam Database RF00008 AJ247116.1/53-133 81 RFA_00422 Hammerhead ribozyme (type III), RF00008, AJ247121.1/133-53 Ham. Ribozyme Unknown Rfam Database RF00008 AJ247121.1/53-133 81 RFA_00423 Hammerhead ribozyme (type III), RF00008, AJ247122.1/132-52 Ham. Ribozyme Unknown Rfam Database RF00008 AJ247122.1/52-132 81 RFA_00424 Hammerhead ribozyme (type III), RF00008, AJ247123.1/132-52 Ham. Ribozyme Unknown Rfam Database RF00008 AJ247123.1/52-132 81 RFA_00425 Hammerhead ribozyme (type III), RF00008, AJ295015.1/58-1 Ham. Ribozyme Unknown Rfam Database RF00008 AJ295015.1/1-58 58

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)