RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00406 Hammerhead ribozyme (type III), RF00008, AJ005319.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005319.1/3-56 54 RFA_00407 Hammerhead ribozyme (type III), RF00008, AJ005322.1/281-334 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005322.1/334-281 54 RFA_00408 Hammerhead ribozyme (type III), RF00008, AJ005322.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005322.1/3-56 54 RFA_00409 Hammerhead ribozyme (type III), RF00008, AJ241819.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241819.1/3-56 54 RFA_00410 Hammerhead ribozyme (type III), RF00008, AJ241823.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241823.1/335-282 54 RFA_00411 Hammerhead ribozyme (type III), RF00008, AJ241828.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241828.1/3-56 54 RFA_00412 Hammerhead ribozyme (type III), RF00008, AJ241831.1/281-334 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241831.1/334-281 54 RFA_00413 Hammerhead ribozyme (type III), RF00008, AJ241831.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241831.1/3-56 54 RFA_00414 Hammerhead ribozyme (type III), RF00008, AJ241838.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241838.1/3-56 54 RFA_00415 Hammerhead ribozyme (type III), RF00008, AJ241840.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ241840.1/3-56 54

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)