RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00396 Hammerhead ribozyme (type III), RF00008, AJ005299.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005299.1/335-282 54 RFA_00397 Hammerhead ribozyme (type III), RF00008, AJ005300.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005300.1/335-282 54 RFA_00398 Hammerhead ribozyme (type III), RF00008, AJ005302.1/281-334 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005302.1/334-281 54 RFA_00399 Hammerhead ribozyme (type III), RF00008, AJ005303.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005303.1/3-56 54 RFA_00400 Hammerhead ribozyme (type III), RF00008, AJ005305.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005305.1/3-56 54 RFA_00401 Hammerhead ribozyme (type III), RF00008, AJ005310.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005310.1/3-56 54 RFA_00402 Hammerhead ribozyme (type III), RF00008, AJ005312.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005312.1/335-282 54 RFA_00403 Hammerhead ribozyme (type III), RF00008, AJ005312.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005312.1/3-56 54 RFA_00404 Hammerhead ribozyme (type III), RF00008, AJ005314.1/281-334 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005314.1/334-281 54 RFA_00405 Hammerhead ribozyme (type III), RF00008, AJ005318.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ005318.1/3-56 54

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)