RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01251 STRUCTURE OF THE RNA BROMINATED TRIDECAMER R(GCGUU- 5BUGAAACGC) AT 1.4 A (BR1) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2R1S 26 PDB_01252 STRUCTURE OF THE RNA BROMINATED TRIDECAMER R(GCGUU- 5BUGAAACGC) AT 1.3 A (BR2) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2R20 26 PDB_01253 STRUCTURE OF THE RNA BROMINATED TRIDECAMER R(GCGUU- 5BUGAAACGC) AT 1.6 A (BRMN) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2R21 26 PDB_01254 STRUCTURE OF THE NATIVE RNA TRIDECAMER R(GCGUUUGAAACGC) AT 1.5 A (NATMN) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2R22 26 PDB_01255 HIGH RESOLUTION STRUCTURE OF A SPECIFIC SYNTHETIC FAB BOUND TO P4-P6 RNA RIBOZYME DOMAIN Other Ribozyme MUS MUSCULUS RCSB Protein Data Bank 2R8S 159 PDB_01256 ELONGATION COMPLEX OF RNA POLYMERASE II WITH ARTIFICIAL RDRP SCAFFOLD Other RNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 2R92 19 PDB_01257 ELONGATION COMPLEX OF RNA POLYMERASE II WITH A HEPATITIS DELTA VIRUS-DERIVED RNA STEM LOOP Other RNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 2R93 14 PDB_01258 GLUTAMINYL-TRNA SYNTHETASE MUTANT C229R WITH BOUND ANALOG 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 2RD2 74 PDB_01259 GLUTAMINYL-TRNA SYNTHETASE MUTANT C229R WITH BOUND ANALOG 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 2RE8 74 PDB_01260 SUBSTRATE RNA POSITIONING IN THE ARCHAEAL H/ACA RIBONUCLEOPROTEIN COMPLEX tRNA PYROCOCCUS FURIOSUS RCSB Protein Data Bank 2RFK 61

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)