RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01231 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH RIBOSOME RECYCLING 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2QBG 2958 PDB_01232 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIB 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QBH 1530 PDB_01233 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIB 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2QBI 2958 PDB_01234 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIB 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QBJ 1530 PDB_01235 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIB 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2QBK 2958 PDB_01236 STRUCTURE OF THE M-BOX RIBOSWITCH APTAMER DOMAIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2QBZ 153 PDB_01237 SOLUTION STRUCTURE OF THE CR7 TERMINAL HAIRPIN LOOP FROM HUMAN TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2QH2 24 PDB_01238 SOLUTION STRUCTURE OF THE U64 H/ACA SNORNA 3' TERMINAL HAIRPIN LOOP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2QH3 23 PDB_01239 SOLUTION STRUCTURE OF THE U85 C/D-H/ACA SCARNA 5' TERMINAL HAIRPIN LOOP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2QH4 18 PDB_01240 INTERACTIONS AND DYNAMICS OF THE SHINE-DALGARNO HELIX IN THE 70S RIBOSOME. THIS FILE, 2QNH, CONTAINS 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2QNH 1685

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)