RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00970 MS2-RNA HAIRPIN (2ONE-5) COMPLEX VIRUS Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C4Q 34 PDB_00971 MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C4Y 30 PDB_00972 MS2-RNA HAIRPIN (2SU-5-6) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C4Z 30 PDB_00973 MS2-RNA HAIRPIN (A-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C50 27 PDB_00974 MS2-RNA HAIRPIN (G-5) COMPLEX Synthetic RNA BACTERIOPHAGE MS2 RCSB Protein Data Bank 2C51 28 PDB_00975 REFINEMENT OF P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLING DATA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2CD1 27 PDB_00976 REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLING DATA- C70U MUTANT Other RNA Unknown RCSB Protein Data Bank 2CD3 27 PDB_00977 REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLINGS- COBALT(III) HEXAMMINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2CD5 27 PDB_00978 REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLING DATA, C70U MUTANT COBALT Other RNA Unknown RCSB Protein Data Bank 2CD6 27 PDB_00979 STRUCTURE OF THE ARABIDOPSIS THALIANA THIAMINE PYROPHOSPHATE RIBOSWITCH WITH ITS REGULATORY LIGAND Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2CKY 154

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)