RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00795 CRYSTAL STRUCTURE OF A 70S RIBOSOME-TRNA COMPLEX REVEALS FUNCTIONAL INTERACTIONS AND REARRANGEMENTS. 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1VSA 3009 PDB_00796 INTERACTIONS AND DYNAMICS OF THE SHINE-DALGARNO HELIX IN THE 70S RIBOSOME. THIS FILE, 1VSP, CONTAINS 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1VSP 3009 PDB_00797 TRIGGER FACTOR RIBOSOME BINDING DOMAIN IN COMPLEX WITH 50S 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1W2B 2876 PDB_00798 SOLUTION STRUCTURE OF AN RNA STEM-LOOP DERIVED FROM THE 3' CONSERVED REGION OF EEL LINE UNAL2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WKS 17 PDB_00799 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH A TEMPLATE-PRIMER RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WNE 13 PDB_00800 C-TERMINAL DOMAIN OF ELONGATION FACTOR SELB COMPLEXED WITH SECIS RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WSU 65 PDB_00803 HIV-1 DIS(MAL) DUPLEX COCL2-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WVD 46 PDB_00804 THE CRYSTAL STRUCTURE OF LEUCYL-TRNA SYNTHETASE AND TRNA(LEUCINE) COMPLEX Other RNA PYROCOCCUS HORIKOSHII RCSB Protein Data Bank 1WZ2 176 PDB_00805 STRUCTURE OF THE TETRAHYMENA RIBOZYME: BASE TRIPLE SANDWICH AND METAL ION AT THE ACTIVE SITE Other Ribozyme TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1X8W 968 PDB_00806 AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION U39C Hairp. Ribozyme Unknown RCSB Protein Data Bank 1X9C 61

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)