RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00701 STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WITH THE ELONGATION-ARRESTED RIBOSOME Synthetic RNA TURSIOPS TRUNCATUS RCSB Protein Data Bank 1RY1 302 PDB_00702 THE STRUCTURE OF A RIBOSOMAL PROTEIN S8/SPC OPERON MRNA COMPLEX Other rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1S03 94 PDB_00703 STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FO 16S rRNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 1S1H 1466 PDB_00704 STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FO 23S rRNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 1S1I 2916 PDB_00705 AVERAGE SOLUTION STRUCTURE OF A PSEUDO-5'-SPLICE SITE FROM THE NEGATIVE REGULATOR OF SPLICING OF ROU Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1S2F 23 PDB_00706 SOLUTION STRUCTURE OF RESIDUES 907-929 FROM ROUS SARCOMA VIRUS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1S34 23 PDB_00707 REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESO 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1S72 2876 PDB_00709 CRYSTAL STRUCTURE OF THE RNA OCTAMER GGCGAGCC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1SA9 40 PDB_00710 CRYSTAL STRUCTURE OF THE RNA OCTAMER GIC(GA)GCC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1SAQ 40 PDB_00713 THE 2.9 ANGSTROMS CRYSTAL STRUCTURE OF T. THERMOPHILUS SERYL-TRNA SYNTHETASE COMPLEXED WITH TRNA SER Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1SER 64

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)