RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00475 CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE COMPLEXED WITH LAMBDA-FORM TRNA(VAL) tRNA PYROCOCCUS HORIKOSHII RCSB Protein Data Bank 1J2B 148 PDB_00477 STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTER 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 1J5A 2774 PDB_00478 STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1J5E 1513 PDB_00479 COMPLEX BETWEEN PAROMOMYCIN AND THE 16S-RRNA A-SITE AT 2.5 A RESOLUTION Other RNA Unknown RCSB Protein Data Bank 1J7T 42 PDB_00481 CRYSTAL STRUCTURE OF THE RIBOTOXIN RESTRICTOCIN AND A 31- MER SRD RNA INHIBITOR Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JBR 62 PDB_00482 CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN AND A 29-MER SRD RNA ANALOG Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JBS 58 PDB_00483 CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JBT 58 PDB_00484 THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1JGO 232 PDB_00485 THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1JGP 232 PDB_00486 THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1JGQ 229

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)