RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00339 NMR SOLUTION STRUCTURE OF THE 5S RRNA E-LOOP/L25 COMPLEX 5S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1D6K 37 PDB_00340 MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1DDY 140 PDB_00341 CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUT Other rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1DFU 38 PDB_00342 CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1DI2 40 PDB_00343 DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX Other rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1DK1 57 PDB_00346 U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX Other Ribozyme HEPATITIS DELTA VIRUS RCSB Protein Data Bank 1DRZ 72 PDB_00347 STRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 1DUL 49 PDB_00349 THE NMR STRUCTURE OF THE 38KDA U1A PROTEIN-PIE RNA COMPLEX REVEALS THE BASIS OF COOPERATIVITY IN REG Synthetic RNA HOMO SAPIENS RCSB Protein Data Bank 1DZ5 44 PDB_00351 CRYSTAL STRUCTURE OF THE SPLICEOSOMAL 15.5KD PROTEIN BOUND TO A U4 SNRNA FRAGMENT snRNA HOMO SAPIENS RCSB Protein Data Bank 1E7K 34 PDB_00352 CORE OF THE ALU DOMAIN OF THE MAMMALIAN SRP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1E8O 50

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)