RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00253 3.0 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA 5S rRNA E. COLI RCSB Protein Data Bank 364D 60 PDB_00254 5'-R(*CP*GP*UP*AP*CP*G)-3' Synthetic RNA SYNTHETIC RCSB Protein Data Bank 377D 24 PDB_00255 THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE Ham. Ribozyme Unknown RCSB Protein Data Bank 379D 41 PDB_00256 RNA PSEUDOKNOT WITH 3D DOMAIN SWAPPING Synthetic RNA SYNTHETIC RCSB Protein Data Bank 387D 26 PDB_00257 A 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS- ACTIVATION RESPONSE REGION RNA STEM REVEALS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 397D 27 PDB_00258 STRUCTURE OF THE 3' HAIRPIN OF THE TYMV PSEUDOKNOT: PREFORMATION IN RNA FOLDING Synthetic RNA SYNTHETIC RCSB Protein Data Bank 3PHP 23 PDB_00259 RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA tRNA YEAST RCSB Protein Data Bank 3TRA 72 PDB_00260 5'-R(*CP*GP*CP*CP*AP*GP*CP*G)-3' Synthetic RNA SYNTHETIC RCSB Protein Data Bank 402D 16 PDB_00261 STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 405D 32 PDB_00262 CRYSTAL STRUCTURE OF AN RNA R(CCCIUGGG) WITH THREE INDEPENDENT DUPLEXES INCORPORATING TANDEM I.U WOB Synthetic RNA SYNTHETIC RCSB Protein Data Bank 409D 48

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)