RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00233 GCAA RNA TETRALOOP, NMR, 10 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZIH 12 PDB_00234 STRUCTURE OF AN RNA DOUBLE HELIX INCLUDING URACIL-URACIL BASE PAIRS IN AN INTERNAL LOOP Other RNA Unknown RCSB Protein Data Bank 205D 24 PDB_00235 RNA HYDRATION: A DETAILED LOOK Synthetic RNA SYNTHETIC RCSB Protein Data Bank 259D 16 PDB_00236 THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA S Synthetic RNA SYNTHETIC RCSB Protein Data Bank 280D 48 PDB_00237 NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA SRP RNA ESCHERICHIA COLI RCSB Protein Data Bank 28SP 28 PDB_00238 NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA SRP RNA ESCHERICHIA COLI RCSB Protein Data Bank 28SR 28 PDB_00239 CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME Ham. Ribozyme Unknown RCSB Protein Data Bank 299D 41 PDB_00240 SOLUTION NMR STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE- TRNA SPLICING ENDONUCLEASES: THE BULGE-H tRNA Unknown RCSB Protein Data Bank 2A9L 38 PDB_00241 RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, MINIMIZED AVERAGE STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2BJ2 40 PDB_00242 SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, MINIMIZED AVERAGE STRUCTURE Other Ribozyme Unknown RCSB Protein Data Bank 2LDZ 30

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)