RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00202 SOLUTION STRUCTURE OF DOMAIN 5 FROM THE AI5(GAMMA) GROUP II INTRON GII Intron Unknown RCSB Protein Data Bank 1R2P 34 PDB_00203 NMR STRUCTURE OF THE R(GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRE Viral & Phage Unknown RCSB Protein Data Bank 1R7W 34 PDB_00205 NMR STRUCTURE OF THE 30MER STEMLOOP-D OF COXSACKIEVIRAL RNA Viral & Phage COXSACKIEVIRUS B3 RCSB Protein Data Bank 1RFR 30 PDB_00206 24-MER RNA HAIRPIN COAT PROTEIN BINDING SITE FOR BACTERIOPHAGE R17 (NMR, MINIMIZED AVERAGE STRUCTURE Viral & Phage Unknown RCSB Protein Data Bank 1RHT 24 PDB_00207 CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RNA 28 PDB_00208 SOLUTION STRUCTURE OF THE CUUG HAIRPIN: A NOVEL RNA TETRALOOP MOTIF Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RNG 12 PDB_00209 THE STRUCTURE OF AN RNA PSEUDOKNOT THAT CAUSES EFFICIENT FRAMESHIFTING IN MOUSE MAMMARY TUMOR VIRUS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RNK 34 PDB_00210 EXTENDING THE FAMILY OF UNCG-LIKE TETRALOOP MOTIFS: NMR STRUCTURE OF A CACG TETRALOOP FROM COXSACKIE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ROQ 14 PDB_00211 RNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RRR 20 PDB_00212 CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RXB 16

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)