RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00161 SHEARED A(ANTI)-A(ANTI) BASE PAIRS IN A DESTABILIZING 2X2 INTERNAL LOOP: THE NMR STRUCTURE OF 5'(RGG Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MUV 18 PDB_00162 THE TANDEM, SHEARED PA PAIRS IN 5'(RGGCPAGCCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MV1 18 PDB_00163 THE TANDEM, FACE-TO-FACE AP PAIRS IN 5'(RGGCAPGCCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MV2 18 PDB_00164 THE TANDEM, SHEARED PP PAIRS IN 5'(RGGCPPGCCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MV6 18 PDB_00165 STRUCTURE OF RIBONUCLEIC ACID, NMR, MINIMIZED AVERAGE STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MWG 16 PDB_00166 CRYSTAL STRUCTURE OF GENETICIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE Other RNA Unknown RCSB Protein Data Bank 1MWL 42 PDB_00168 SOLUTION STRUCTURE OF B. SUBTILIS T BOX ANTITERMINATOR RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1N53 25 PDB_00169 STRUCTURE OF THE PYRIMIDINE-RICH INTERNAL LOOP IN THE Y- DOMAIN OF POLIOVIRUS 3'UTR Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1N66 22 PDB_00170 SOLUTION STRUCTURE OF HIV-1 STEM LOOP SL1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1N8X 36 PDB_00171 SOLUTION STRUCTURE OF THE P2B HAIRPIN FROM HUMAN TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1NA2 30

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)