RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00121 SOLUTION STRUCTURE OF CONSERVED AGNN TETRALOOPS: INSIGHTS INTO RNT1P RNA PROCESSING Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1K6H 22 PDB_00122 BULGED ADENOSINE IN AN RNA DUPLEX Other RNA Unknown RCSB Protein Data Bank 1K8S 25 PDB_00123 HIV-1(MAL) RNA DIMERIZATION INITIATION SITE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1K9W 92 PDB_00124 CONFORMATION OF AN RNA PSEUDOKNOT FROM MOUSE MAMMARY TUMOR VIRUS, NMR, 1 STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KAJ 32 PDB_00125 THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2, THALLIUM FORM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KD3 22 PDB_00126 THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2, BARIUM FORM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KD4 22 PDB_00127 THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2 METAL FREE FORM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KD5 22 PDB_00128 TAR-TAR "KISSING" HAIRPIN COMPLEX DERIVED FROM THE HIV GENOME, NMR, 1 STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KIS 32 PDB_00129 SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP FROM E. COLI TRNA(PHE) tRNA E. COLI RCSB Protein Data Bank 1KKA 17 PDB_00130 STRUCTURE OF THE HISTONE MRNA HAIRPIN REQUIRED FOR CELL CYCLE REGULATION OF HISTONE GENE EXPRESSION Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KKS 24

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)