RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] NDB_00073 AT BASE PAIRS ARE LESS STABLE THAN GC BASE PAIRS IN Z-DNA: THE CRYSTAL STRUCTURE OF D(M(5)CGTAM(5)CG Synthetic RNA SYNTHETIC Nucleic Acid Database zdfb06 12 NDB_00074 CRYSTAL STRUCTURE OF A Z-DNA FRAGMENT CONTAINING THYMINE/2- AMINOADENINE BASE PAIRS Synthetic RNA SYNTHETIC Nucleic Acid Database zdfb11 12 NDB_00075 NDB id zdfs33 Unknown Unknown Nucleic Acid Database zdfs33 12 PDB_00001 CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BAS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 157D 24 PDB_00002 BRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 17RA 21 PDB_00003 PAROMOMYCIN BINDING INDUCES A LOCAL CONFORMATIONAL CHANGE IN THE A SITE OF 16S RRNA, NMR, 20 STRUCTU Other RNA Unknown RCSB Protein Data Bank 1A3M 27 PDB_00004 LOOP D/LOOP E ARM OF E. COLI 5S RRNA, NMR, 9 STRUCTURES 5S rRNA E. COLI RCSB Protein Data Bank 1A51 41 PDB_00005 NMR STRUCTURE OF A CLASSICAL PSEUDOKNOT: INTERPLAY OF SINGLE-AND DOUBLE-STRANDED RNA, 24 STRUCTURES Other RNA Unknown RCSB Protein Data Bank 1A60 44 PDB_00006 SOLUTION STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX- Other RNA Unknown RCSB Protein Data Bank 1A9L 38 PDB_00007 UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES Other rRNA Unknown RCSB Protein Data Bank 1AFX 12

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)