RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] NDB_00048 CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA ELEMENT Synthetic RNA Unknown Nucleic Acid Database pdt009 56 NDB_00049 CO-CRYSTAL STRUCTURE OF THE HNF-3/FORK HEAD DNA-RECOGNITION MOTIF RESEMBLES HISTONE H5 Synthetic RNA SYNTHETIC Nucleic Acid Database pdt013 26 NDB_00050 1.9 A RESOLUTION REFINED STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF TATAAAAG Synthetic RNA SYNTHETIC Nucleic Acid Database pdt025 56 NDB_00051 THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATION tRNA Unknown Nucleic Acid Database trna05 75 NDB_00060 NDB id udd006 Unknown Unknown Nucleic Acid Database udd006 12 NDB_00068 CRYSTAL AND MOLECULAR STRUCTURE OF THE AMMONIUM SALT OF THE DINUCLEOSIDE MONOPHOSPHATE D(CPG) Synthetic RNA SYNTHETIC Nucleic Acid Database zdb020 4 NDB_00069 THE TETRAMER D(CPGPCPG) CRYSTALLIZES AS A LEFT-HANDED DOUBLE HELIX Synthetic RNA SYNTHETIC Nucleic Acid Database zdd023 8 NDB_00070 GT WOBBLE BASE-PAIRING IN Z-DNA AT 1.0 ANGSTROM ATOMIC RESOLUTION: THE CRYSTAL STRUCTURE OF D(CGCGTG Synthetic RNA SYNTHETIC Nucleic Acid Database zdf013 12 NDB_00071 STRUCTURAL CHARACTERISTICS OF ENANTIOMORPHIC DNA: CRYSTAL ANALYSIS OF RACEMATES OF THE D(CGCGCG) DUP Synthetic RNA SYNTHETIC Nucleic Acid Database zdf040 12 NDB_00072 MOLECULAR STRUCTURE OF (M5DC-DG)3: THE ROLE OF THE METHYL GROUP ON 5-METHYL CYTOSINE IN STABILIZING Synthetic RNA SYNTHETIC Nucleic Acid Database zdfb03 12

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)