RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] NDB_00038 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: VI. STRUCTURE OF TWO DRUG-DINU Synthetic RNA SYNTHETIC Nucleic Acid Database drbb11 4 NDB_00039 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. II. STRUCTURE OF AN ETHIDIUMDI Synthetic RNA SYNTHETIC Nucleic Acid Database drbb12 4 NDB_00040 REPORTER MOLECULES AS PROBES OF DNA CONFORMATION: STRUCTURE OF A CRYSTALLINE COMPLEX CONTAINING 2-ME Synthetic RNA SYNTHETIC Nucleic Acid Database drbb13 4 NDB_00041 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. IX. STRUCTURES OF TWO N,N-DIME Synthetic RNA SYNTHETIC Nucleic Acid Database drbb14 4 NDB_00042 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. IX. STRUCTURES OF TWO N,N-DIME Synthetic RNA SYNTHETIC Nucleic Acid Database drbb15 4 NDB_00043 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: V. STRUCTURE OF TWO AMINOACRID Synthetic RNA SYNTHETIC Nucleic Acid Database drbb16 4 NDB_00044 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: VI. STRUCTURE OF TWO DRUG-DINU Synthetic RNA SYNTHETIC Nucleic Acid Database drbb17 4 NDB_00045 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. I. STRUCTURE OF AN ETHIDIUM DI Synthetic RNA SYNTHETIC Nucleic Acid Database drbb19 4 NDB_00046 X-RAY CRYSTALLOGRAPHIC ANALYSIS OF A TERNARY INTERCALATION COMPLEX BETWEEN PROFLAVINE AND THE DINUCL Synthetic RNA SYNTHETIC Nucleic Acid Database drd004 4 NDB_00047 MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT Synthetic RNA SYNTHETIC Nucleic Acid Database gdl001 24

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)