RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] NDB_00001 NDB id adh012 Unknown Unknown Nucleic Acid Database adh012 16 NDB_00002 NDB id adh013 Unknown Unknown Nucleic Acid Database adh013 16 NDB_00003 STRUCTURES OF THE MISMATCHED DUPLEX D(GGGTGCCC) Synthetic RNA SYNTHETIC Nucleic Acid Database adh016 16 NDB_00004 CRYSTAL STRUCTURE OF D(GGGCGCCC)-HEXAGONAL FORM Synthetic RNA SYNTHETIC Nucleic Acid Database adh029 16 NDB_00005 THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATUR Synthetic RNA SYNTHETIC Nucleic Acid Database adh030 16 NDB_00006 THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATUR Synthetic RNA SYNTHETIC Nucleic Acid Database adh031 16 NDB_00007 NDB id adh034 Unknown Unknown Nucleic Acid Database adh034 16 NDB_00008 NDB id adh098 Unknown Unknown Nucleic Acid Database adh098 16 NDB_00009 RNA DOUBLE-HELICAL FRAGMENTS AT ATOMIC RESOLUTION: I. THE CRYSTAL AND MOLECULAR STRUCTURE OF SODIUM Synthetic RNA SYNTHETIC Nucleic Acid Database arb002 4 NDB_00010 THE CRYSTAL AND MOLECULAR STRUCTURE OF A CALCIUM SALT OF GUANYLYL-3',5'-CYTIDINE (GPC) Synthetic RNA SYNTHETIC Nucleic Acid Database arb003 8

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)