RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: tmRNA Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 726 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00567 Stre.equi._TRW-40041_1-349 tmRNA Unknown tmRNA Database Stre.equi._TRW-40041_1-349 349 TMR_00568 Stre.gord._TRW-29390_1-349 tmRNA Unknown tmRNA Database Stre.gord._TRW-29390_1-349 349 TMR_00569 Stre.livi._AJ867055_1-399 tmRNA Unknown tmRNA Database Stre.livi._AJ867055_1-399 399 TMR_00570 Stre.miti._TRW-246201_1-348 tmRNA Unknown tmRNA Database Stre.miti._TRW-246201_1-348 348 TMR_00571 Stre.muta._TRW-210007_1-349 tmRNA Unknown tmRNA Database Stre.muta._TRW-210007_1-349 349 TMR_00572 Stre.pneu._AE008453_1-348 tmRNA Unknown tmRNA Database Stre.pneu._AE008453_1-348 348 TMR_00573 Stre.pneu._TRW-1313_1-348 tmRNA Unknown tmRNA Database Stre.pneu._TRW-1313_1-348 348 TMR_00574 Stre.pneu._TRW-216600_1-348 tmRNA Unknown tmRNA Database Stre.pneu._TRW-216600_1-348 348 TMR_00575 Stre.pyog._AE006568_1-345 tmRNA Unknown tmRNA Database Stre.pyog._AE006568_1-345 345 TMR_00576 Stre.pyog._AE010048_1-348 tmRNA Unknown tmRNA Database Stre.pyog._AE010048_1-348 348

Analyse the 726 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 726 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 726 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)