RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01003 COMPLEX STRUCTURE OF CCA ADDING ENZYME WITH MINI-HELIX LACKING CCA tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DR5 32 PDB_01004 COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDC tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DR7 33 PDB_01005 COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDC AND CTP tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DR8 33 PDB_01006 COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDCC tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DR9 34 PDB_01007 COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDCC AND ATP tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DRA 34 PDB_01008 COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINICCA tRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DRB 35 PDB_01009 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE COMPLEXED WITH TRNACYS A Other RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DU3 71 PDB_01010 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE COMPLEXED WITH TRNACYS Other RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DU4 71 PDB_01011 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE E418N/E420N MUTANT COMPL Other RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DU5 71 PDB_01012 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE E418N/E420N MUTANT COMPL Other RNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 2DU6 71

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)