RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00798 SOLUTION STRUCTURE OF AN RNA STEM-LOOP DERIVED FROM THE 3' CONSERVED REGION OF EEL LINE UNAL2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WKS 17 PDB_00799 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH A TEMPLATE-PRIMER RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WNE 13 PDB_00800 C-TERMINAL DOMAIN OF ELONGATION FACTOR SELB COMPLEXED WITH SECIS RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WSU 65 PDB_00803 HIV-1 DIS(MAL) DUPLEX COCL2-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WVD 46 PDB_00804 THE CRYSTAL STRUCTURE OF LEUCYL-TRNA SYNTHETASE AND TRNA(LEUCINE) COMPLEX Other RNA PYROCOCCUS HORIKOSHII RCSB Protein Data Bank 1WZ2 176 PDB_00805 STRUCTURE OF THE TETRAHYMENA RIBOZYME: BASE TRIPLE SANDWICH AND METAL ION AT THE ACTIVE SITE Other Ribozyme TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1X8W 968 PDB_00806 AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION U39C Hairp. Ribozyme Unknown RCSB Protein Data Bank 1X9C 61 PDB_00807 AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION U39C Hairp. Ribozyme Unknown RCSB Protein Data Bank 1X9K 62 PDB_00808 INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT F 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 1XBP 2884 PDB_00809 SOLUTION STRUCTURE OF THE EXTENDED U6 ISL AS OBSERVED IN THE U2/U6 COMPLEX FROM SACCHAROMYCES CEREVI Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XHP 32

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)