RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00704 STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FO 23S rRNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 1S1I 2916 PDB_00705 AVERAGE SOLUTION STRUCTURE OF A PSEUDO-5'-SPLICE SITE FROM THE NEGATIVE REGULATOR OF SPLICING OF ROU Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1S2F 23 PDB_00706 SOLUTION STRUCTURE OF RESIDUES 907-929 FROM ROUS SARCOMA VIRUS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1S34 23 PDB_00707 REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESO 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1S72 2876 PDB_00709 CRYSTAL STRUCTURE OF THE RNA OCTAMER GGCGAGCC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1SA9 40 PDB_00710 CRYSTAL STRUCTURE OF THE RNA OCTAMER GIC(GA)GCC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1SAQ 40 PDB_00713 THE 2.9 ANGSTROMS CRYSTAL STRUCTURE OF T. THERMOPHILUS SERYL-TRNA SYNTHETASE COMPLEXED WITH TRNA SER Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1SER 64 PDB_00714 HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH MG2+ BOUND Other Ribozyme HEPATITIS DELTA VIRUS RCSB Protein Data Bank 1SJ3 73 PDB_00715 CRYSTAL STRUCTURE OF A C75U MUTANT HEPATITIS DELTA VIRUS RIBOZYME PRECURSOR, IN CU2+ SOLUTION Other Ribozyme HEPATITIS DELTA VIRUS RCSB Protein Data Bank 1SJ4 73 PDB_00716 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN COB Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1SJF 74

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)