RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00654 CRYSTAL STRUCTURE OF CCA-PHE-CAP-BIOTIN BOUND SIMULTANEOUSLY AT HALF OCCUPANCY TO BOTH THE A-SITE AN 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1Q86 2882 PDB_00655 SOLUTION STRUCTURE OF THE MALACHITE GREEN RNA BINDING APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Q8N 38 PDB_00659 CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX Other rRNA BACILLUS STEAROTHERMOPHILUS RCSB Protein Data Bank 1QA6 116 PDB_00663 CRYSTAL STRUCTURE OF AN 18 BASE PAIR COPY CONTROL RELATED RNA DUPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QCU 44 PDB_00664 HIV-1 TAR RNA/NEOMYCIN B COMPLEX Other RNA HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 RCSB Protein Data Bank 1QD3 29 PDB_00667 STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE COMPLEXED WITH ITS COGNATE TRNA Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 1QF6 76 PDB_00668 BACTERIOPHAGE LAMBDA N-PROTEIN-NUTBOXB-RNA COMPLEX Viral & Phage BACTERIOPHAGE LAMBDA RCSB Protein Data Bank 1QFQ 15 PDB_00669 GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 1QRS 74 PDB_00670 GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 1QRT 74 PDB_00671 GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 1QRU 74

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)