RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Gutell Lab CRW Site , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1056 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_01323 d.16.e.T.contejeani 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.contejeani 1388 CRW_01326 d.16.e.T.eccentrica 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.eccentrica 1806 CRW_01330 d.16.e.T.hominis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.hominis 1362 CRW_01331 d.16.e.T.pseudonana 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.pseudonana 1808 CRW_01333 d.16.e.T.undulatum 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.undulatum 1780 CRW_01337 d.16.e.Thalassionema.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Thalassionema.sp 1792 CRW_01342 d.16.e.Undatella.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Undatella.sp 1801 CRW_01343 d.16.e.V.acridophagus 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.acridophagus 1399 CRW_01344 d.16.e.V.corneae 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.corneae 1259 CRW_01345 d.16.e.V.culicis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.culicis 1364

Analyse the 1056 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1056 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1056 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)