RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Gutell Lab CRW Site , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1056 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_01153 d.16.e.B.moritziana 16S rRNA Unknown Gutell Lab CRW Site d.16.e.B.moritziana 1793 CRW_01155 d.16.e.B.pacifica 16S rRNA Unknown Gutell Lab CRW Site d.16.e.B.pacifica 1808 CRW_01158 d.16.e.Bacillidium.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Bacillidium.sp 1413 CRW_01159 d.16.e.Bangia.sp.NWT 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Bangia.sp.NWT 1830 CRW_01160 d.16.e.Bangia.sp.VIS7 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Bangia.sp.VIS7 1837 CRW_01162 d.16.e.C.belgica 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.belgica 1807 CRW_01164 d.16.e.C.coeruleus 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.coeruleus 1802 CRW_01165 d.16.e.C.criophilum 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.criophilum 1802 CRW_01166 d.16.e.C.crispus 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.crispus 1778 CRW_01168 d.16.e.C.lunata 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.lunata 1343

Analyse the 1056 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1056 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1056 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)