RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Gutell Lab CRW Site , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1056 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00671 a.I1.e.P.carinii.Pc2.C1.LSU.1921 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.carinii.Pc2.C1.LSU.1921 355 CRW_00672 a.I1.e.P.carinii.Pc3.C1.LSU.1921 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.carinii.Pc3.C1.LSU.1921 381 CRW_00673 a.I1.e.P.clavariiformis.C1.SSU.943 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.clavariiformis.C1.SSU.943 448 CRW_00674 a.I1.e.P.inouyei.C1.SSU.1506 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.inouyei.C1.SSU.1506 409 CRW_00675 a.I1.e.P.inouyei.C1.SSU.943 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.inouyei.C1.SSU.943 390 CRW_00676 a.I1.e.P.macrosporus.C1.SSU.1506 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.macrosporus.C1.SSU.1506 433 CRW_00677 a.I1.e.P.macrosporus.C1.SSU.943 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.macrosporus.C1.SSU.943 380 CRW_00678 a.I1.e.P.pachydermus.C1.SSU.1506 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.pachydermus.C1.SSU.1506 1155 CRW_00679 a.I1.e.P.pachydermus.C1.SSU.943 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.pachydermus.C1.SSU.943 392 CRW_00680 a.I1.e.P.polycephalum.C1.LSU.1925 GI Intron Unknown Gutell Lab CRW Site a.I1.e.P.polycephalum.C1.LSU.1925 1017

Analyse the 1056 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1056 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1056 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)