RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Gutell Lab CRW Site , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1056 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00490 d.233.b.D.radiodurans.rrnB 23S rRNA Deinococcus radiodurans Gutell Lab CRW Site d.233.b.D.radiodurans.rrnB 2880 CRW_00491 d.233.b.D.radiodurans.rrnC 23S rRNA Deinococcus radiodurans Gutell Lab CRW Site d.233.b.D.radiodurans.rrnC 2880 CRW_00492 d.233.b.E.coli 23S rRNA Escherichia coli Gutell Lab CRW Site d.233.b.E.coli 2904 CRW_00494 d.233.b.E.faecium 23S rRNA Unknown Gutell Lab CRW Site d.233.b.E.faecium 2913 CRW_00495 d.233.b.E.rhusiopathiae 23S rRNA Unknown Gutell Lab CRW Site d.233.b.E.rhusiopathiae 2901 CRW_00496 d.233.b.H.influenzae 23S rRNA Unknown Gutell Lab CRW Site d.233.b.H.influenzae 2897 CRW_00497 d.233.b.H.pylori 23S rRNA Unknown Gutell Lab CRW Site d.233.b.H.pylori 2968 CRW_00498 d.233.b.K.pneumoniae 23S rRNA Unknown Gutell Lab CRW Site d.233.b.K.pneumoniae 2903 CRW_00499 d.233.b.L.interrogans 23S rRNA Unknown Gutell Lab CRW Site d.233.b.L.interrogans 2958 CRW_00500 d.233.b.L.lactis 23S rRNA Unknown Gutell Lab CRW Site d.233.b.L.lactis 2901

Analyse the 1056 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1056 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1056 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)